The modelling of dynamical systems is a pervasive concern for not only describing but also predicting and controlling natural phenomena and engineered systems. Current data-driven approaches often assume prior knowledge of the relevant state variables or result in overparameterized state spaces. Boyuan Chen and his co-authors proposed a neural network model that estimates the degrees of freedom and attempts to discover the state variables of a dynamical system. Despite its innovative approach, this baseline model lacks a connection to the physical principles governing the systems it analyzes, leading to unreliable state variables.This research proposes a method that leverages the physical characteristics of second-order Hamiltonian systems to constrain the baseline model. The proposed model outperforms the baseline model in identifying a minimal set of non-redundant and interpretable state variables.